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3D Molecule

RASMOL an excellent and free molecular viewer.
RasTop 2.2 a molecular visualization software adapted from the program RasMol
DS Visualizer 4.1 combines state of the art molecular graphics with a full range of Windows desktop integration tools.
ICM-Browser 3.8-3 reads PDB files or alignment files directly from the database
ActiveICM 1.2-2 view and display 3D ICM graphical slides and animations interactively inside Microsoft PowerPoint and web browsers
VMD 1.9.2 beta 1 is designed for the visualization and analysis of biological systems such as proteins, nucleic acids, lipid bilayer assemblies, etc.
CN3D 4.3.1 a helper application for your web browser that allows you to view 3-dimensional structures from NCBI's Entrez retrieval service.
WPDB 2.2 interrogate the 3-dimensional structure of biological macromolecules as found in the Protein Data Bank (PDB) using query and display tools
DTMM 4.2 Demo Desktop Molecular Modeller ( DTMM ) is a simple-to-use molecular modelling program .
POV-Ray 3.7 creates three-dimensional, photo-realistic images using a rendering technique called ray-tracing.
MegaPov 1.2.1 a custom unofficial version of POV-Ray with a lot of additional features.
Mol2Mol 5.6.3 Demo molecular modelling program.
MolPOV 2.1.0 graphics file converter that reads Brookhaven Protein Data Bank format files and produces a ready-to-render input file for the Persistence of Vision ray tracer (POV-Ray).
PovChem 2.1.1 a chemical visualization and illustration program with a new graphic interface.
ORTEP-III 2014.1 a MS-Windows version of the current release of ORTEP-III (1.0.3).

PWT(PLATON for Windows Taskbar) 1.17

a versatile crystallographic tool implementing a large variety of standard geometrical calculations
Mage 6.47 a 3D vector display program which shows "kinemage" graphics.
Prekin 6.51 prepares molecular kinemages (input files for Mage & KiNG) from PDB-format coordinate files
KiNG 2.21 an interactive system for three-dimensional vector graphics.
Swiss-PdbViewer 4.1 an application that provides a user friendly interface allowing to analyze several proteins at the same time
StrukEd Demo an editor for molecules that allows the input of chemical structures in a very comfortable way.
JMVS 4 041122 Java3D Molecular Visualisation System
Re_View 1.0 a molecular viewer, animator, analyzer, and MOPAC reaction path
Oscail 2015 an integrated high quality system for building and modelling molecules (Mopac and Iconc are included) and the system drives PC GAMESS and Tinker.
Moilin 2015 will work in stand alone mode or under Oscail and will use Tinker Files if Tinker has been installed
Tinker 7.0.1 molecular modeling software
Biodesigner 0.75 molecular modeling and visualization program
MoluCAD 1.034 Demo full-featured molecular modeling and visualization tool designed for Windows.

Protein Explorer 2.80

free software for visualizing the three-dimensional structures of protein, DNA, and RNA macromolecules
Chimera 1.10.1 a highly extensible, interactive molecular graphics program.
Jmol 14.2.12 a free, open source molecule viewer for students, educators, and researchers in chemistry and biochemistry.
Ramachandran Plot Explorer 1.0 It has been specially designed to focus solely on the ?, ^ and ? angles.
ProteinScope LE 1.0.5 A single, integrated application for your desktop * Hand optimized 3D for complex molecules
CHIME 2.6 SP8 view chemical structures from within popular Web browsers,
YASARA View 14.12.2 is available for free and contains all the functions you need to explore a macromolecular structure interactively.
NOC 3.01 a free program for protein structure model-building, visualization, validation and analysis ...
3DNA 2.1 20141222 a versatile package for the analysis, rebuilding, and visualization of three-dimensional nucleic acid structures, based on a standard reference frame
ArgusLab 4.0.1 A molecular modeling, graphics, and drug design program
CueMol a program for the macromolecular structure visualization on the Windows platform
jimp 2 0.091 a free program for visualizing and manipulating molecules.
SweetMollyGrace 1.3 a suite of freeware and shareware tools for automating work of rendering and animating molecules
Facio 18.8.2 3D-Graphics program for Molecular Modeling and Visualization of Quantum Chemical Calculations
VEGA ZZ It's the evolution of the well known VEGA OpenGL package and includes several new features and enhancements making your research jobs very easy.
GDIS 0.99 a GTK based program for the display and manipulation of isolated molecules and periodic systems
PDBlib 2.2 an extensible object oriented class library, written in C++ for representing the 3-dimensional structure of biological macromolecules.
QuteMol 0.4.1 open source (GPL), interactive, high quality molecular visualization system

Ascalaph 1.8.88

programs for molecular modeling
BALLView 1.4.2 standalone molecular modeling and visualization application
BioEditor 1.6.1 & BioViewer 1.5.7 Software to prepare and present structure annotations containing formatted text, graphics, sequence data, and interactive molecular views
ProteinShader beta 0.9.4 Molecular visualization tool.
PDB Editor 090203 User friendly PDB (Protein Data Bank) file editor
Zodiac 0.65 A Molecular Modelling suite for drug design.
Avogadro An advanced molecular editor.
Bioclipse 2.6.1 An open source workbench for chemo- and bioinformatics.
Antheprot 3D 1.0.162 A molecular graphics program.
Chemis3D 2.89b Molecular Viewer Applet.
Chemitorium 4.0 Free Organic Chemistry Analysis and Visualisation Tool
LigandScout 3.12 A software tool that allows to derive 3D pharmacophores from structural data of macromolecule/ligand complexes.
AutoDock 4.2.6 A suite of automated docking tools
Benchware 3D Explorer 2.7 3D Chemical Visualization and Decision Support.
PyRx 0.9.1 Virtual Screening software for Computational Drug Discovery.
VisProt3DS 3.03 Add Proteins and DNA in 3D stereoscopic viewer
OpenAstexViewer 3.0 Software for molecular visualisation.

COSMOS 5.0 PRO trial

COSMOS Viewer 3.0

software package that integrates modeling, crystallography and NMR spectroscopy.

Freeware product for presentation of molecules.

MOIL 12.0.3923 A Public Domain Molecular Modeling Software.
OpenMM 6.2.0 A library which provides tools for modern molecular modeling simulation.
OpenStructure 1.3.3 Open-source computational structural biology framework.
MMPRO 0.7 Molecule Visualization & Analysis Program.
CMView 1.1.1 Contact map visualization and analysis tool.
BRAGI 20091106 A Protein Visualization and Modeling Program



3D Molecular Modeling
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