Bio-chip |
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| ScanAlyze
2.51 |
Process fluorescent images of microarrays |
| Cluster
2.20 |
Perform a variety of types of cluster analysis and other types of processing on large microarray datasets. |
| TreeView
1.60 |
Graphically browse results of clustering and other analyses from Cluster |
| ArrayMaker 2.6 |
provides high performance robotic control of microarrayer robots |
| J-Express
pro 2.7 |
software package for analysis and visualization of microarray data |
| IconoClust
3.1 Demo |
imaging software for the analysis of array images |
| MAExplorer
Version 0.96.34.01 |
Java-based data-mining facility for cDNA or oligonucleiotide microarray databases |
| FreeView & FreeOView |
programs for viewing and optimizing gene expression dendrograms |
| dchip
08.04.09 |
DNA-Chip Analyzer (dChip) (www.dchip.org) is a Windows software package for probe-level and high-level analysis of Affymetrix gene expression microarrays and SNP microarrays |
| SAM
3.6.0b1 |
Significance Analysis of Microarrays |
| BRB-ArrayTools
3.7.0b1 |
visualization and statistical analysis of DNA microarray gene expression data |
| AMADA
2.0.7 |
program for organizing, exploring, visualizing, and analyzing microarray data |
| DNA_MAP
1.0 |
DNA Macroarrays Analysis Program |
| GalFileGenerator v1.4 |
Conversion of a file of 96 well plates into a file of 384 well plates, and conversion of a file of 384 well plates into an Axon GenePix Gene Array List file |
| Array-A-Lizer
1.03 |
expedient determination of the quality of multiple spotted DNA microarray experiments |
| cluster
3.0 08.03.08 |
enhanced version of Cluster |
| ExpressionSieve
Lite |
combines the best practice of statistical analysis, software engineering, bioinformatics and complex data visualization |
| GenePattern
3.1 |
analytic tools for genomic data |
| GenMAPP
2.1 |
Gene Map Annotator and Pathway Profiler |
| MADAM
v4.0 |
primary data entry, tracking, and reporting system. |
| Spotfinder
v3.1 |
multi-channel image analysis tool for microarray images |
| MIDAS
2.19 |
a normalization and filtering tool used to process the raw data output from Spotfinder |
| MeV
4.1.01 |
main data analysis and visualization tool for microarray |
| TreeArrange |
program for reordering and displaying expression array data. |
| Java
Treeview 1.1.1 |
Viewer for Microarray Data in the PCL or CDT format |
| EXPANDER
4.0.2 |
EXpression Analyzer and DisplayER |
| OligoArray
2.1 |
a program that computes gene specific oligonucleotides that are free of secondary structure for genome-scale oligonucleotide microarray construction. |
| BAGEL 3.62 |
Bayesian Analysis of Gene Expression Levels (BAGEL): a program for the statistical analysis of spotted microarray data. |
| CAGED 1.0 |
a computer program for the analysis of temporal gene expression data. |
| GAAS |
Gene Array Analyzer Software |
| GLR |
a statistical analysis program to identify differentially expressed genes from microarray data |
| ANOVA 2.0 |
Statistical analysis is based on the single-factor ANalysis Of VAriance (ANOVA) |
| Rosetta |
toolkit for analyzing tabular data within the framework of rough set theory. |
| EXCEL template |
suite of Excel spreadsheet templates have been developed by Chih Long Liu that allows quick and useful processing of time course data for clustering analysis |
| tools for microarray |
tools for microarray |
| UCSF Spot |
a program for microarray image quantification |
| ArrayMiner 5.3 lite |
a set of analysis tools using advanced algorithms to reveal the true structure of your gene expression data |
| Venn Mapper 1.01 |
a program that compares heterologous microarray data sets, based on the number of common, differentially expressed genes. |
| MAIA 2.75 Demo |
Microarray Image Analysis Software , |
| MAGIC Tool 2.1 |
MicroArray Genome Imaging & Clustering Tool. |
| Array Tools 3.3 |
Add-In for Microsoft Excel, which is designed to handle the microarray data. |
| Genom 2005 |
application for analysing array-experiments. |
