||Paup Windows Interface software |
||the PHYLogeny Inference Package |
||a simple program for displaying phylogenies |
||an experimental program for comparing gene and species trees. |
||NEXUS Data Editor) is a program to create and edit NEXUS format data files |
||an experimental program for comparing host and parasite trees |
||a freeware utilities package that works with the phylogenetic inference package Phylip |
||a computer program to reconstruct phylogenetic trees from molecular sequence data by maximum likelihood. |
|| a Java tool for the visualization of annotated phylogenetic trees |
||a software package developed primarily for the construction and drawing of phylogenetic trees |
||program for analysing evolutionary trees |
|| a tree drawing program able to draw any phylogenetic tree |
||Molecular Evolutionary Genetics Analysis |
|| Selection on Amino Acid Properties |
||software for evolutionary biology |
||Analysis Library A Java library for molecular evolution and phylogenetics |
||a collection of command line programs written in Java to access some selected features in PAL |
|| application for computing evolutionary networks from molecular sequence data. |
||a Java computer program to estimate gene genealogies including multifurcations and/or reticulations (i.e. networks). |
||a program for the calculation of the statistics and associated P-values for the nested clade analysis (NCA) developed by Templeton and collaborators. |
|RDP 4.46 Beta
||Recombination detection program |
||a distance based phylogeny reconstruction algorithm. |
||Tree and Reticulogram reconstruction |
||a computer package for PCs which estimates and tests gene diversities and differentiation statistics from codominant genetic markers |
|ProfDist 0.9.9 Beta
||A tool for the construction of large phylogenetic trees based on profile distances |
||a new distance-based clustering method, triplet clustering algorithm |
||Phylogenetic Visualization tool |
||a software package for PHylogenetics And Sequence Evolution |
||Bayesian Analysis in Molecular Biology and Evolution |
||phylogenetic model averaging
||a windows and linux interface for modeltest. |
||determining the optimal phylogenetic supertree |
|Phylogenetic Independence 2.0
||to conduct the Test For Serial Independence (TFSI) on continuously valued characters and the Runs Test on discretely valued characters (Abouheif 1999) |
||a java implementation of the evolutionary trace method |
||program for making phylogenetic trees starting from sequence data |
||implements some straight-forward birth-death models for simulating phylogenies |
||cross-platform program for Bayesian MCMC analysis of molecular sequences |
||Macroevolutionary Analysis & Simulation |
||Compare phylogenetic evolutionary trees interactively and automatically |
|| display a phylogenetic tree in several different styles |
||a comprehensive phylogenetic tree visualization and manipulation software |
||a computer program that simulates the branching of an evolutionary tree |
||Genealogy Interval Explorer |
||Phylogenetics, Evolutionary Biology, and Bioinformatics in a moduLar Environment |
|| a program for building and displaying phylogenetic trees |
|| a program for the Bayesian estimation of phylogeny, |
||software for generating evolutionary trees and networks , |
||Phylogenetic Data Editor |
||software for Parsimony ratchet analyses with PAUP. |
||provides an easy and fast access to cophylogenetic analyses |
|| An interactive viewer for large phylogenetic trees |
|TreeGraph 2.4.0-456 beta
|| A graphical editor for phylogenetic trees. |
|| Primer design and sequence statistics for phylogenetic DNA data sets
||A tool to aid in the classification & evolutionary relationships of protein sequences.
|| Dnamic graphics and annotations for phylogenetic or classification trees analyses .
|| An editor for large phylogenetic trees written in Java.
|Bosque 2.0 alpha
||A graphycal software to perform phylogenetic analyses.
|| An application for comparing two trees using coupled interaction.
|| A graphical viewer of phylogenetic trees.
||A program for qualitative analysis of sets of trees.
|| Likelihood estimation algorithms in phylogenetics.
|| Phylogenetic tree drawing.
|| Reconstruct Ancestral State in Phylogenies