RNA |
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| RNA draw 1.1 b2 |
an integrated program for RNA secondary structure calculation and analysis under 32-bit Microsoft Windows |
| RNAstructure
5.7 |
a Windows program for the prediction and analysis of RNA secondary structure. |
| RnaViz 2.0.3 |
a user-friendly, portable, GUI program for producing publication-quality secondary structure drawings of RNA molecules. |
| loopDloop
2.07b |
a tool for drawing RNA secondary structures in molecular biology. |
| Circles
0.1.1 |
program for inferring RNA secondary structure using the comparative method. |
| SStructView
1.2.2 |
a Java applet for viewing RNA secondary structures and linking to multiple computational backends. |
| Vienna
RNA Package 2.1.9 |
programs for the prediction and comparison of RNA secondary structures. |
| XRNA 1.2.0b |
a Java based suite of tools for the creation, annotation and display of RNA secondary structure diagrams. |
| PseudoViewer 3.0 |
a new XML web service and web application program for visualizing RNA secondary structures with pseudoknots. |
| OligoEngine 2.0 |
Researchers use the OligoEngine platform to design sequences and purchase oligos, |
| pknotsRG 1.3 |
a tool for folding RNA secondary structures, including the class of simple recursive pseudoknots. |
| RNAshapes 2.1.6 |
abstraction maps structures to a tree-like domain of shapes |
| miRanda 201008 |
an algorithm for finding genomic targets for microRNAs |
| RNAz 2.1 |
program for predicting structurally conserved and thermodynamically stable RNA secondary structures in multiple sequence alignments. |
| RnaFamily |
a simple software tools that enables to display all secondary structures of a family of RNA molecules. |
| RNApasta 1.01 |
A utility for collecting statistics from aligned and structurally annotated RNA sequences. |
| RnaDv 1_0 |
A Design and Visualization Tool for RNA Secondary Structure. |
| Assemble2 1.2 |
A graphical tool to construct and study RNA architectures |
| VARNA 3-93 |
Visualization Applet for RNA. |
| nocoRNAc 1.23 |
Software for non-coding RNA characterization. |
| RnallViewer 1.0.1 |
RNA Analysis Visualization Tool |
| Online Tools |
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| siDirect 2.0 |
highly effective, target specific siRNA online design site. |
| tRNAscan-SE 1.21 |
a program for improved detection of transfer RNA genes in genomic sequence. |
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