RNA |
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| RNA draw 1.1 b |
an integrated program for RNA secondary structure calculation and analysis under 32-bit Microsoft Windows |
| RNAstructure
4.5 |
a Windows program for the prediction and analysis of RNA secondary structure. |
| RnaViz 2.0 |
a user-friendly, portable, GUI program for producing publication-quality secondary structure drawings of RNA molecules. |
| loopDloop
2.07b |
a tool for drawing RNA secondary structures in molecular biology. |
| Circles
0.1.0 |
program for inferring RNA secondary structure using the comparative method. |
| SStructView
1.2 |
a Java applet for viewing RNA secondary structures and linking to multiple computational backends. |
| Vienna
RNA Package 1.6.4 |
programs for the prediction and comparison of RNA secondary structures. |
| XRNA1.1.12b |
a Java based suite of tools for the creation, annotation and display of RNA secondary structure diagrams. |
| STAR Demo |
software for STructure Analysis of RNA |
| PseudoViewer 3.0 |
a new XML web service and web application program for visualizing RNA secondary structures with pseudoknots. |
| OligoEngine |
Researchers use the OligoEngine platform to design sequences and purchase oligos, |
| KineViewer |
RNA/DNA folding predictions including pseudoknots and entangled helices |
| pknotsRG 1.3 |
a tool for folding RNA secondary structures, including the class of simple recursive pseudoknots. |
| RNAshapes 2.1.1 |
abstraction maps structures to a tree-like domain of shapes |
| miRanda 1.0b |
an algorithm for finding genomic targets for microRNAs |
| RNAz 1.0 |
program for predicting structurally conserved and thermodynamically stable RNA secondary structures in multiple sequence alignments. |
| RnaFamily |
a simple software tools that enables to display all secondary structures of a family of RNA molecules. |
| RNApasta 070518 |
A utility for collecting statistics from aligned and structurally annotated RNA sequences. |
| CLC RNA Workbench 1.0.1 |
software for RNA analysis |
| Online Tools |
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| siDirect |
highly effective, target specific siRNA online design site. |
| tRNAscan-SE 1.21 |
a program for improved detection of transfer RNA genes in genomic sequence. |
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