| Online tools |
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| BCM Search Launcher |
The Baylor College of Medicine Search Launcher is an on-going project to organize molecular biology-related search and analysis services available on the WWW by function by providing a single point-of-entry for related searches |
| DAS |
Transmembrane Prediction serve |
| TopPred 2 |
Topology prediction of membrane proteins |
| SOSUI |
Classification and Secondary Structure Prediction of Membrane Proteins |
| PSIpred - MEMSAT 3 |
The PSIPRED Protein Structure Prediction Server |
| HMMTOP 2.0 |
Prediction of transmembrane helices and topology of proteins |
| TMpred |
Prediction of Transmembrane Regions and Orientation |
| TMHMM 2.0 |
Prediction of transmembrane helices in proteins |
| The PredictProtein server |
PredictProtein is a service for sequence analysis, structure and function prediction. |
| SMART |
simple modular architecture research tool |
| SPLIT 4.0 |
Membrane Protein Secondary Structure Prediction Server |
| PRED-TMR |
Prediction of Transmembrane regions in proteins |
| CoPreThi |
A Java-program which Combines the results of several methods ( available throught the Internet ) that Predict Transmembrane regions in proteins |
| TMAP |
Displays membrane spanning regions |
| multalin |
Multiple sequence alignment by Florence Corpet |
| Protein Sequence Analysis |
Protein sequence analysis Server |
| PSA |
Protein Structure Prediction Server |
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| Biology Workbench 3.2 |
a web-based tool for biologists. The WorkBench allows biologists to search many popular protein and nucleic acid sequence databases. |
| SRS 6.1.3.11 |
Sequence Retrieval System |
| Structure analysis |
Secondary structure: MFOLD/PREDATOR/TOPPRED/VIENNARNA/EMBOSS;
Tertiary structure: COSA |
| Phylogeny |
Parsimony method programs/ Distance matrix method programs / Maximum likelihood method programs / Computation of distance / Manipulation and visualization of phylogenetic tree/ Other programs |
| Sequences Alignments and Comparisons |
Sequences consensus and Sequences comparaison / Pairwise comparisons / Multiple alignments / Alignments of structures / Alignments display / HMM (Hidden Markov Models) |
| sewer |
An acronym, stands for SEquence analysis using WEb Resources. |
| SMS |
The Sequence Manipulation Suite |
