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STC 1.2

Size: 230KB
Language: English
Directory:Phylogenetic Analysis
Requirements: Windows/Linux
Date added: 2012-06-12
Web Site: Home Page



We propose a new distance-based clustering method, triplet clustering algorithm (STC), to reconstruct phylogenies. The main idea is the introduction of a natural definition of so-called k-representative sets. Based on k-representative sets, shortest triplets are reconstructed and serve as building blocks for the STC algorithm to agglomerate sequences for tree reconstruction in O(n^2) time for n sequences. Simulations with 500, 1000 and 5000 sequences data sets show that STC gives better topological accuracy than other methods tested.


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