3D Molecule |
|
| RASMOL 2.7.4.2 |
an excellent and free molecular viewer. |
| RasTop 2.2 |
a molecular visualization software adapted from the program RasMol |
| MolMol 2k.2 |
molecular graphics program for displaying, analyzing, and manipulating the three-dimensional structure of biological macromolecules |
| CrystInfo 1.0 |
Windows application designed for easy visualization. building and examination of crystals. |
| DS Visualizer 2.01 |
combines state of the art molecular graphics with a full range of Windows desktop integration tools. |
| DS Visualizer ActiveX Control 2.01 |
a fully Windows integrated, 3D molecular renderer. |
| ICM-Browser 3.5 1P |
reads PDB files or alignment files directly from the database |
| VMD 1.8.6 |
is designed for the visualization and analysis of biological systems such as proteins, nucleic acids, lipid bilayer assemblies, etc. |
| CN3D 4.1 |
a helper application for your web browser that allows you to view 3-dimensional structures from NCBI's Entrez retrieval service. |
| WPDB 2.2 |
interrogate the 3-dimensional structure of biological macromolecules as found in the Protein Data Bank (PDB) using query and display tools |
| DTMM 4.2 Demo |
Desktop Molecular Modeller ( DTMM ) is a simple-to-use molecular modelling program . |
| gopenmol 3.0 |
a tool for the visualization and analysis of molecular structures and their chemical properties. |
| POV-Ray 3.7b27 |
creates three-dimensional, photo-realistic images using a rendering technique called ray-tracing. |
| MegaPov 1.2.1 |
a custom unofficial version of POV-Ray with a lot of additional features. |
| Mol2Mol 5.6.0 Demo |
molecular modelling program. |
| MolPOV 2.0.8 |
graphics file converter that reads Brookhaven Protein Data Bank format files and produces a ready-to-render input file for the Persistence of Vision ray tracer (POV-Ray). |
| PovChem 2.1.1 |
a chemical visualization and illustration program with a new graphic interface. |
| Ortep-3 2.00 |
a MS-Windows version of the current release of ORTEP-III (1.0.3). |
|
PWT(PLATON for Windows Taskbar) 1.13 |
a versatile crystallographic tool implementing a large variety of standard geometrical calculations |
| Mage 6.44 |
a 3D vector display program which shows "kinemage" graphics. |
| Prekin 6.42 |
prepares molecular kinemages (input files for Mage & KiNG) from PDB-format coordinate files |
| KiNG 2.13 |
an interactive system for three-dimensional vector graphics. |
| Swiss-PdbViewer 4.0 |
an application that provides a user friendly interface allowing to analyze several proteins at the same time |
| StrukEd Demo |
an editor for molecules that allows the input of chemical structures in a very comfortable way. |
| JMVC 4 041122 |
Java3D Molecular Visualisation System |
| Re_View 1.0 |
a molecular viewer, animator, analyzer, and MOPAC reaction path
converter. |
| Oscail X 2008 |
an integrated high quality system for building and modelling molecules (Mopac and Iconc are included) and the system drives PC GAMESS and Tinker. |
| Moilin X 2008 |
will work in stand alone mode or under Oscail and will use Tinker Files if Tinker has been installed |
| Tinker 4.2 |
molecular modeling software |
| Biodesigner 0.75 |
molecular modeling and visualization program |
| MoluCAD Demo |
full-featured molecular modeling and visualization tool designed for Windows. |
| ACD/3D Viewer for ISIS 4.5 |
Convert two-dimensional structures from ACD/ChemSketch into their three-dimensional |
| PyMOL 0.99rc6 |
molecular visualization system on an OPEN-SOURCE foundation. |
| Qmol 4.01 |
a program for viewing molecular structures and animating molecular trajectories. |
|
Protein Explorer 2.80 |
free software for visualizing the three-dimensional structures of protein, DNA, and RNA macromolecules |
| Chimera 1.2540 |
a highly extensible, interactive molecular graphics program. |
| Jmol 11.4.6 |
a free, open source molecule viewer for students, educators, and researchers in chemistry and biochemistry. |
| Ramachandran Plot Explorer 1.0 |
It has been specially designed to focus solely on the ?, ^ and ? angles. |
| ProteinScope LE 1.0.5 |
A single, integrated application for your desktop * Hand optimized 3D for complex molecules |
| CHIME 2.6 SP7 |
view chemical structures from within popular Web browsers, |
| YASARA View 8.6.29 |
is available for free and contains all the functions you need to explore a macromolecular structure interactively. |
| NOC 3.01 |
a free program for protein structure model-building, visualization, validation and analysis ... |
| 3DNA 1.5 |
a versatile package for the analysis, rebuilding, and visualization of three-dimensional nucleic acid structures, based on a standard reference frame |
| ArgusLab 4.0.1 |
A molecular modeling, graphics, and drug design program |
| CueMol 1.1.0.182 |
a program for the macromolecular structure visualization on the Windows platform |
| jimp 2 0.091 |
a free program for visualizing and manipulating molecules. |
| SweetMollyGrace 1.2 |
a suite of freeware and shareware tools for automating work of rendering and animating molecules |
| Facio 11.7.1 |
3D-Graphics program for Molecular Modeling and Visualization of Quantum Chemical Calculations |
| VEGA ZZ 2.2.0 |
It's the evolution of the well known VEGA OpenGL package and includes several new features and enhancements making your research jobs very easy. |
| GDIS 0.773 |
a GTK based program for the display and manipulation of isolated molecules and periodic systems |
| PDBlib 2.2 |
an extensible object oriented class library, written in C++ for representing the 3-dimensional structure of biological macromolecules. |
| QuteMol 0.4.1 |
open source (GPL), interactive, high quality molecular visualization system |
| Ascalaph 1.1.3 Demo |
programs for molecular modeling |
| BALLView 1.2 |
standalone molecular modeling and visualization application |
DNA |
|
| jambw 1.1 |
the Java based Molecular Biologist's Workbench. |
| AnnHyb v.4.941 |
a tool for working with and managing nucleotide sequences in multiple formats. |
|
Chromas 2.33
Chromas lite 2.01 |
a software for chromatogram files created by sequencers. |
|
DnaSP 4.50.3 |
DNA Sequence Polymorphism, is a software package for the analysis of nucleotide polymorphism from aligned DNA sequence data. |
| DFW 2.51 trail |
a compact, easy to use DNA analysis program, ideal for small-scale sequencing projects |
| Artemis R10 |
a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation. |
| ACT R7 |
(Artemis Comparison Tool) is a DNA sequence comparison viewer based on Artemis. |
| GDA 1.1 |
Genetic Data Analysis software. |
| Sequencher 4.8 Demo |
the industry standard software for DNA sequence analysis. |
|
MeltCalc Lite
MeltCalc 2.06 Pro |
The ultimate thermodynamic modelling spreadsheet for Excel. |
| ConsInspector 3.3 |
predicts potential binding sites in sequences of unlimited length by comparing candidates with predefined consensus descriptions of protein binding sites. |
| GenomePixelizer 2003.10.1 |
be useful in the detection of duplication events in genomes, tracking the "footprints" of evolution, as well as displaying the genetic maps and other aspects of comparative genetics. |
|
GenescanView1.2 4
GenescanView1.2 8 |
allows to visualize genescan files (.fsa format from ABI PRISM sequencers) and to view the exact peak size. |
| Sequin 8.10 |
a stand-alone software tool developed by the NCBI for submitting and updating entries to the GenBank, EMBL, or DDBJ sequence databases. |
| DNAuser 1.0 |
an integrated DNA/Protein analysis tool package for molecular biology/biotech researchers. |
| Gene Construction Kit 3.0b16 Demo |
allows graphic manipulation of DNA sequences and sophisticated plasmid drawing options. |
| GenomeComp 1.3 |
a DNA sequence comparison tool and graphical user interface (GUI) viewer implemented in Perl/Tk. |
| Apollo 1.9.3 |
a genome annotation viewer and editor. |
| SNPHunter 1.75 |
a tool for SNP Search and downloading with local management. |
| SSRHunter 1.3 |
SSRHunter 1.3 Simple Sequence Repeat Search tool |
| iCE 3.5 |
Internet Contig Explorer. |
| MB6.84 |
DNA analysis program. |
| FinchTV 1.4 |
DNA sequence analysis program. |
| Sequence Scanner v1.0 |
The free Sequence Scanner Software enables you to view, edit, print and export sequence data generated using the Applied Biosystems Genetic Analyzers. |
| CodonCode Aligner 2.0.6 |
a program for sequence assembly, contig editing, and mutation detection, available for Windows and Mac OS X. |
| WinGene 2.31 |
an application for Win95/Win98/Win NT for analysis of nucleotide sequences. |
| BioLign 4.0.6 |
tool for alignment, SNP identification, and PHRAP evaluation. |
| SequenceViewer 1.0 |
A graphic tool to visualize DNA sequences. |
| SERIAL CLONER 1.3 |
software for DNA cloning, sequence analysis and visualisation, |
| Xplorer 2.4.2 |
Stand alone Chromatogram Editor with Mutation Detection. |
| DNA Counter v1.0.2 |
Tool shows the proportions between nucleotides in a DNA sequence. |
| Chromatogram Explorer 2.0 |
Tool will list all chromatogram files (SCF, ABI, AB1, AB) in the current folder. |
| NSA 3.3 |
Nucleotide Sequence Analyzer |
| YCDMA 3.1.1 |
This program is designated to manage microsatellite data |
| G-InforBIO V1.89 |
e-Workbench for "databasing", comparative genome analysis. |
RNA |
|
| RNA draw |
an integrated program for RNA secondary structure calculation and analysis under 32-bit Microsoft Windows. |
|
RNAstructure 4.6 |
a Windows program for the prediction and analysis of RNA secondary structure. |
| RnaViz 2.0 |
a user-friendly, portable, GUI program for producing publication-quality secondary structure drawings of RNA molecules. |
| loopDloop 2.07b |
a tool for drawing RNA secondary structures in molecular biology. |
| Circles 0.1.0 |
program for inferring RNA secondary structure using the comparative method. |
| SStructView 1.2 |
a Java applet for viewing RNA secondary structures and linking to multiple computational backends. |
| Vienna RNA Package 1.7.2 |
programs for the prediction and comparison of RNA secondary structures. |
| XRNA1.1.12b |
a Java based suite of tools for the creation, annotation and display of RNA secondary structure diagrams. |
| STAR Demo |
software for STructure Analysis of RNA. |
| PseudoViewer 3.0 |
a new XML web service and web application program for visualizing RNA secondary structures with pseudoknots. |
| OligoEngine 2.0 |
Researchers use the OligoEngine platform to design sequences and purchase oligos, |
| KineViewer |
RNA/DNA folding predictions including pseudoknots and entangled helices. |
| pknotsRG 1.3 |
a tool for folding RNA secondary structures, including the class of simple recursive pseudoknots. |
| RNAshapes 2.1.5 |
abstraction maps structures to a tree-like domain of shapes. |
| miRanda 3.1 |
an algorithm for finding genomic targets for microRNAs. |
| RNAz 1.0 |
program for predicting structurally conserved and thermodynamically stable RNA secondary structures in multiple sequence alignments. |
| RnaFamily |
a simple software tools that enables to display all secondary structures of a family of RNA molecules. |
| RNApasta 080418 |
A utility for collecting statistics from aligned and structurally annotated RNA sequences. |
| CLC RNA Workbench 3.0.1 |
software for RNA analysis. |
Protein |
|
| AnthePro 5.2 |
ANalyse THE PROTeins software. |
| PSAAM |
Protein Sequence Analysis And Modelling . |
| VHMPT |
a graphical Viewer and editor for Helical Membrane Protein Topologies. |
| MPEx 3.0 |
Membrane Protein Explorer . |
| Osprey 1.2.0 |
a tool for visualization and manipulation of complex interaction networks. |
| InterViewer 4.0 |
for visualizing large-scale protein interaction networks. |
| GPMAW 7.10 DEMO /8.00update |
General Protein/Mass Analysis for Windows. |
| STORM 1.01 |
Systematic Tailored Orf-data Retrieval & Management. |
| PIVOT 2.0 |
Protein Interactions VisualizatiOn Tool. |
| WinPep3.01 |
A versatile tool for the analysis of aminoacid sequences. |
| PAT 0.9 |
a Java-application for constructing multiple protein sequence alignments from regions of high similarity. |
| CLC Protein Workbench 4.0.1 Demo |
An advanced workbench for protein analysis. |
| ProTag 1.4 |
a SmartTag and Add-In solution for the Microsoft Office applications. |
| SubMito 1.1 |
(the first computational system for predicting protein submitochondria locations from its primary sequence. |
Education |
|
| mmp.zip |
the demonstration of Main Metabolic Pathways for PC |
| linpath |
Linear Pathway Simulator |
| protlab 3.01 |
let them experiment with the simulation |
| molmed.zip |
The Molecular Basis of Medicine |
| biochem 1.75 |
an electronic biochemistry tutorial. |
| Photo |
Photosynthesis a tutorial program for photosynthesis |
| Virtlab 2.0 |
a self-training program based on PBL (Problem-Based- Learning Pathway) built to simulate a molecular biology laboratory. |
| GENUP 5.5 |
Computer aided learning for quantitative genetics. |
| hands on genetics |
computer programs for the teaching and learning of genetics. |
| ScienceMatrix Demo |
Cell Structure & Function education software. |
| Digital Frog 2.5a |
Digital Frog software |
| CTB 2.0 |
Cell Tissue Body explorer. |
| Molecular Genetics 3.1 Demo |
Education software for BIO |
Bio-Engineering |
|
| BRD 4.0 |
Bioreactor Design software |
| BioStat 4.4 |
Fermentor Control Program |
| PenSim v2.0 |
Program for Dynamic Simulation of Fed-Batch Penicillin Production |
| SuperPro Designer 7.5b06 Demo |
tool for process and product development engineers |
PCR |
|
| Primer Premier 5.0 DEMO |
A comprehensive primer design tool to design |
| Oligo 7.00 Demo |
Oligo 6.71 Demo researchers in PCR and related technologies software |
| Primer D'Signer 1.1 |
Software for pASK-IBA and pPR-IBA Vectors |
| Array Designer 4.25 Demo |
tool to efficiently design hundreds of specific oligos |
| Beacon Designer 7.50 Demo |
Beacon Designer 5.10 Demo helps design successful molecular beacon |
| NetPrimer |
Free! Primer Analysis Software |
| TGGE-STAR |
to facilitate the design of PCR primers |
| e-PCR 2.3.9 |
Electronic PCR (e-PCR) is computational procedure that is used to identify sequence tagged sites(STSs), within DNA sequences. |
| FastPCR 5.3 |
a free software for design PCR primers |
| OligoMaster 1.0.151 |
a multi-user, multi-platform oligonucleotide cataloguing application |
| PerlPrimer v1.1.14 |
a free, open-source GUI application that designs primers for PCR. |
| AmplifX 1.5.2 |
software for seeking in a collection of primers |
| AutoDimer 1.0 |
developed to rapidly screen previously selected PCR primers |
| MutaPrimer 1.00 |
a desktop tool to design primers for site directed mutagenesis kits. |
| ORFprimer 1.6.4.1 |
Java Application for automatical primer design. |
| Primer Prim'er 5.6.0 |
a PCR primer design tool that completely automates the primer design process. |
| PCR Analyzer v 1.0 |
Absolute estimation of initial concentrations of amplicon in a real-time RT-PCR process |
Conversion |
|
| vised11.exe |
Visual Sequence Editor |
| ForCon 1.0 |
tool for the conversion of nucleic acid and amino acid sequence alignments |
| SeqVerter 2.0.4.1 |
a free sequence file format conversion utility by GeneStudio, Inc. |
| GeneStudio Pro 2.1.1.5 |
a modern suite of molecular biology applications for the Windows platform built on our sequence format conversion engine, SeqVerter |
| FASTA/BLAST SCAN 2.3 |
a program for processing nucleotide sequences alignment made with FASTA and BLAST alignment tools. |
| RevComp 2.4 |
creates the reverse complement of a DNA sequence |
| BioCocoa 2.0 |
code for handling and manipulating biological sequences. |
| DNACompress |
a fast and efficient compression algorithm for DNA sequences |
| SeqnConverter 3.0 |
a tool for convert and format of the files of nucleic acid sequences, |
| APSC 1.0 |
Advanced Protein Sequence Converter |
| Readseq 2.1.27 |
a conversion program for bioinformatics. |
| XML2PDB |
a command line program designed to extract the structure information (.pdb) from the xml structure files. |
| DNAsmac 1.5.0 |
Sequence Manager And Converter . |
| DataConvert 1.0 |
a tool for converting DNA or protein data file to formats usable in major analytical software. |
Fasta2MultiFasta v1.9.10
multi-FASTA2FASTA 1.0
ABI to FASTA converter 08.04.10 |
software tools for merging muti-files in a single file
Tool will split a multi-FASTA file in multiple standard FASTA files.
Free ABI to FASTA converter . |
| abi2xml 1.2 |
Utility to convert the binary file format from an ABI PRISM TM 377 DNA Sequencer to an xml file |
Phylogenetic |
|
| WINIPAUP 1.0 |
Paup Windows Interface software. |
| Phylip 3.68 |
the PHYLogeny Inference Package |
| TreeView 1.6.6 |
a simple program for displaying phylogenies |
| GeneTree 1.3 |
an experimental program for comparing gene and species trees. |
| NDE 0.5.0 |
NEXUS Data Editor) is a program to create and edit NEXUS format data files |
| TreeMap 1.0 |
an experimental program for comparing host and parasite trees |
| Phyltools 1.32 |
a freeware utilities package that works with the phylogenetic inference package Phylip |
| tree-puzzle 5.2 |
a computer program to reconstruct phylogenetic trees from molecular sequence data by maximum likelihood. |
| ATV 4.0.5 |
a Java tool for the visualization of annotated phylogenetic trees |
| TREECON 1.3b Demo |
a software package developed primarily for the construction and drawing of phylogenetic trees |
| COMPONENT 2.0 |
program for analysing evolutionary trees |
| NJplot 2.2 |
a tree drawing program able to draw any phylogenetic tree |
| MEGA 4.1b |
Molecular Evolutionary Genetics Analysis |
| TreeSAAP 3.2 |
Selection on Amino Acid Properties |
| mesquite 2.5 |
software for evolutionary biology |
| PAL 1.51 |
Analysis Library A Java library for molecular evolution and phylogenetics |
| Vanilla 1.2 |
a collection of command line programs written in Java to access some selected features in PAL |
| SplitsTree 4.10 |
application for computing evolutionary networks from molecular sequence data. |
| TCS 1.21 |
a Java computer program to estimate gene genealogies including multifurcations and/or reticulations (i.e. networks). |
| GEODIS 2.5 |
a program for the calculation of the statistics and associated P-values for the nested clade analysis (NCA) developed by Templeton and collaborators. |
| RDP 3b28 |
Recombination detection program |
| FastME 1.0 |
a distance based phylogeny reconstruction algorithm. |
| REAP |
an integrated environment for the manipulation and phylogenetic analysis |
| T-REX 4.01 |
Tree and Reticulogram reconstruction |
| FSTAT 2.9.3.2 |
a computer package for PCs which estimates and tests gene diversities and differentiation statistics from codominant genetic markers |
| ProfDist 0.9.8 |
A tool for the construction of large phylogenetic trees based on profile distances |
| STC 1.2 |
a new distance-based clustering method, triplet clustering algorithm |
| SymmeTREE |
tests of differential diversification rates |
| PVT |
Phylogenetic Visualization tool |
| TREEFINDER 200810 |
computes phylogenetic trees from molecular sequences. |
| PHASE 2.0 |
a software package for PHylogenetics And Sequence Evolution |
| BAMBE 2.01b |
Bayesian Analysis in Molecular Biology and Evolution |
| MODELTEST 3.7 |
program for the selection the model of nucleotide substitution that best fits the data. |
| MTgui 1.5 |
a windows and linux interface for modeltest. |
| Clann 3.13 |
determining the optimal phylogenetic supertree |
| Phylogenetic Independence 2.0 |
to conduct the Test For Serial Independence (TFSI) on continuously valued characters and the Runs Test on discretely valued characters (Abouheif 1999) |
| Jevtrace2 v3.12b |
a java implementation of the evolutionary trace method |
| NimbleTree 2.6 |
program for making phylogenetic trees starting from sequence data |
| Phyl-O-Gen 1.1 |
implements some straight-forward birth-death models for simulating phylogenies |
| BEAST 1.4.8 |
cross-platform program for Bayesian MCMC analysis of molecular sequences |
| MESA 1.9.23 |
Macroevolutionary Analysis & Simulation |
| TreeJuxtaposer 2.1 |
Compare phylogenetic evolutionary trees interactively and automatically |
| TreeExplorer 2.12 |
display a phylogenetic tree in several different styles |
| TreeMe 07/2008 |
a comprehensive phylogenetic tree visualization and manipulation software |
| DNATREE 1.2 |
a computer program that simulates the branching of an evolutionary tree |
| Genie 3.0 |
Genealogy Interval Explorer |
| Pebble v1.0 |
Phylogenetics, Evolutionary Biology, and Bioinformatics in a moduLar Environment |
| ArboDraw |
a program for building and displaying phylogenetic trees |
| PhyloDraw 0.82 |
a drawing tool for creating phylogenetic trees. |
| MrBayes 3.1.2 |
a program for the Bayesian estimation of phylogeny, |
| Network 4.502 |
software for generating evolutionary trees and networks , |
| PhyDE 0.995 |
Phylogenetic Data Editor |
| PRAP 2.0 |
software for Parsimony ratchet analyses with PAUP. |
| CopyCat 1.13 |
provides an easy and fast access to cophylogenetic analyses |
| Dendroscope 2.0.1 |
An interactive viewer for large phylogenetic trees |
| TreeGraph 2.0.16-130 alpha |
A graphical editor for phylogenetic trees. |
Plasmid Map |
|
| pDRAW32 1.1.97 |
Scientific software for the molecular biologist |
| Visual Cloning 3.2.4 Demo |
visual, intuitive and integrated molecular cloning software |
| CloneMap 2.12 Demo |
solution for fast and easy plasmid map drawing,restriction site mapping, and virtural cloning |
| SimVector 4.20 Demo |
tool for drawing publication and vector catalog quality maps |
| ApE 1.12 |
A Plasmid Editor |
| BVTech Plasmid 1.0 |
DNA plasmid drawing software |
| Plasm 1.4.0 |
A plasmid drawing software. |
| XPlasMap 0.96 |
a DNA mapping program for Mac OS |
Image Analysis |
|
| ImageTool (IT) 3.0 |
a free image processing and analysis program |
| ImageJ 1.40 |
Java image processing program |
| Cross Checker 2.91 |
PC software package, developed for analysis of genetic fingerprints such as RFLP, RAPD and AFLP |
| Band Leader 3.0 |
Image analysis software for Gel Electrophoresis samples |
| Scion Image 4.03 |
the Windows version of Scion Image, which is in turn a version of the popular Macintosh program, NIH Image, written at the National Institutes of Health. |
| OSIRIS 4.19 |
a viewer for Papyrus / DICOM images (the actual standard for viewing, storing acquiring, communicating radiological and non-radiological medical images). |
| Melanie Viewer 6.0 |
visualize gels and related data obtained through the use of the full version of ImageMaster 2D Platinum or Melanie by colleagues. I |
| TotalLab 2006c |
software range for the fast and accurate analysis of 1D gel images. |
| QuantiScan 3.0 Demo |
software to analyze a wide variety of material including polyacrylamide and agarose gels |
| Engauge Digitizer 4.1 |
digitizing software converts an image file showing a graph or map, into numbers. |
| Graph Digitizer 2.16 |
for digitization of orthogonal graphs |
| Peak Explorer 2.11 |
for automatic processing of spectra and also any plots having strongly expressed local maxima (peaks). |
| Volocity LE 4.3.2 |
A feature-filled, user friendly software product, provided free of charge to scientists |
| GetData 2.24 |
a program for digitizing graphs and plots. |
| Bersoft Image Measurement 5.21 |
application that makes it easy to acquire, measure, and analyze digital images |
| DigitizeIt 1.5 |
software replaces a digitizer tablet. |
| CellC v1.2 |
software for quantification of labeled bacteria by automated image analysis. |
| LabImage 4.0 trial |
1D gel electrophoresis windows software |
| Grid cell counter 08.04.08 |
Display a grid over your image. |
| BioImageXD Beta r1401 |
free open source software for analysis, processing and 3D rendering of multi dimensional microscopy images. |
Alignment |
|
| Geneious 4.0.4 |
genome & proteome research tools |
| MACAW 2.05 |
Multiple Alignment Construction & Analysis Workbench |
| Clustal W 2.0.7 |
multiple alignment program for DNA or proteins. |
| FASTA 35.4.1 |
Compares a protein sequence to another protein sequence or to a protein database, or a DNA sequence to another DNA sequence or a DNA library. |
| GeneDoc 2.7.0 |
A Full Featured Multiple Sequence Alignment Editor, Analyser and Shading Utility for Windows. |
|
BLAST 2.2.18 |
The Basic Local Alignment Search Tool |
| SeqPup 0.9 |
a biological sequence editor and analysis program |
| K-Estimator 6.1 |
a program to estimate the number of synonymous (Ks) and nonsynonymous substitutions (Ka) per site and the confidence intervals by Monte Carlo simulations. |
| BioEdit 7.0.9 |
a biological sequence alignment editor written for Windows 95/98/NT/2000/XP. |
| DAMBE 4.5.67 |
Data Analysis and Molecular Biology and Evolution software |
| SeaView 2.2 |
a graphical multiple sequence alignment editor |
| Jalview 2.3 |
a multiple alignment editor written entirely in java |
| DNASIS Max trial 2.9 |
Bioinformatics software |
| Genamics Expression 1.1 |
a revolutionary new Windows application for DNA and protein sequence analysis. |
| Vector NTI Viewer 4.0.1 |
a freeware program, allows scientists to study and analyze biological molecules. |
| Jellyfish 3.3.1 |
an innovative software tool that provides helpful gene analysis capabilities in an intuitive and easy-to-use interface. |
| ProSeq 3.0 test |
program for sequence editing and population genetics (mol/evol) analysis. |
| SMS 2 |
The Sequence Manipulation Suite |
| Staden 1.6.0 |
A fully developed set of DNA sequence assembly (Gap4), editing and analysis tools |
| ISYS v1.35 |
a dynamic, flexible open source platform for the integration of bioinformatics software tools and databases. |
| DNAScriptor 1.00 |
a program in which a user can test and review DNA or protein sequence analysis concepts |
| PhyloGrapher2003.4.3 |
a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements) |
|
Vector NTI Advance 10.3.0 Demo |
Sequence analysis and data management software |
| SeWeR 3.0 |
an acronym, stands for SEquence analysis using WEb Resources. |
| WinBlast v.0.2.0 |
a Windows graphical front-end for NCBI BLAST. |
| SeqVISTA 1.81 |
A Graphical Tool for Sequence Feature Visualization and Comparison |
| GENOME EXPLORER 1.0b |
a Java front end to many useful bioinformatics tools |
| PowerBlast 1.2.0 |
Blast local tools |
| JAligner 1.0 |
local pairwise sequence alignment software |
| DNAMAN 6.0 Demo |
sequence analysis tools |
| bioxm 2.6 |
tools for sequence analysis. |
| CLC Sequence Viewer 5.0.1 |
bioinformatics analyses workbench. |
| MAFFT 6.522 |
a multiple sequence alignment program. |
| TuneClustalX |
a multiple sequence alignment program. |
| Exonerate 1.3.0 |
a multiple sequence alignment program. |
| Lalnview 3.0 |
graphical program for visualizing local alignments between two sequences |
| NeoBio 1.0 pre-alpha |
Bioinformatics Algorithms in Java |
| STRAP 07.10 |
Multiple Sequence Alignment Interactive Program |
| Mauve 2.1.1 |
Genome Alignment Software |
| Laj 05.11.4 |
tool for viewing and manipulating the output from pairwise alignment programs |
| YASS v1.12 |
DNA local alignment tool |
| Utopia 1.3.0 |
Molecular Structure Viewer and Colour INteractive Editor for Multiple Alignments |
| MolQuest trial 1.6.3 |
Bioinformatics Toolbox for analysis of biomedical data |
| GENtle 1.9.4 |
a software for DNA and amino acid editing |
| Align-m v2.3 |
multiple alignment software |
| DNA Baser v2.10 |
DNA sequence assembly, contig editing, and mutation detection software. |
| QAlign 2.60.80 |
Multiple alignment and editor software. |
| seqtools v. 8.4.040 |
tools for basic and advanced analyses of nucleotide and protein sequences. |
| BlastViewer 2.2 |
software to explore BLAST results graphically |
| CGViz 1.3 |
highly flexible framework for designing biomolecular viewers. |
Bio-chip |
|
| ScanAlyze 2.51 |
Process fluorescent images of microarrays |
| Cluster 2.20 |
Perform a variety of types of cluster analysis and other types of processing on large microarray datasets. |
| TreeView 1.60 |
Graphically browse results of clustering and other analyses from Cluster |
| ArrayMaker 2.6 |
provides high performance robotic control of microarrayer robots |
| J-Express pro 2.7 |
software package for analysis and visualization of microarray data |
| IconoClust 3.1 Demo |
imaging software for the analysis of array images |
| MAExplorer Version 0.96.34.01 |
Java-based data-mining facility for cDNA or oligonucleiotide microarray databases |
| FreeView & FreeOView |
programs for viewing and optimizing gene expression dendrograms |
| dchip 08.07.12 |
DNA-Chip Analyzer (dChip) (www.dchip.org) is a Windows software package for probe-level and high-level analysis of Affymetrix gene expression microarrays and SNP microarrays |
| SAM 3.6.0b1 |
Significance Analysis of Microarrays |
| BRB-ArrayTools 3.7.0b1 |
visualization and statistical analysis of DNA microarray gene expression data |
| AMADA 2.0.7 |
program for organizing, exploring, visualizing, and analyzing microarray data |
| DNA_MAP 1.0 |
DNA Macroarrays Analysis Program |
| GalFileGenerator v1.4 |
Conversion of a file of 96 well plates into a file of 384 well plates, and conversion of a file of 384 well plates into an Axon GenePix Gene Array List file |
| Array-A-Lizer 1.03 |
expedient determination of the quality of multiple spotted DNA microarray experiments |
| cluster 3.0 08.03.08 |
enhanced version of Cluster |
| ExpressionSieve Lite |
combines the best practice of statistical analysis, software engineering, bioinformatics and complex data visualization |
| GenePattern 3.1 |
analytic tools for genomic data |
| GenMAPP 2.1 |
Gene Map Annotator and Pathway Profiler |
| MADAM v4.0 |
primary data entry, tracking, and reporting system. |
| Spotfinder v3.1 |
multi-channel image analysis tool for microarray images |
| MIDAS 2.19 |
a normalization and filtering tool used to process the raw data output from Spotfinder |
| MeV 4.1.01 |
main data analysis and visualization tool for microarray |
| TreeArrange |
program for reordering and displaying expression array data. |
| Java Treeview 1.1.1 |
Viewer for Microarray Data in the PCL or CDT format |
| EXPANDER 4.0.2 |
EXpression Analyzer and DisplayER |
| OligoArray 2.1 |
a program that computes gene specific oligonucleotides that are free of secondary structure for genome-scale oligonucleotide microarray construction. |
| BAGEL 3.62 |
Bayesian Analysis of Gene Expression Levels (BAGEL): a program for the statistical analysis of spotted microarray data. |
| CAGED 1.0 |
a computer program for the analysis of temporal gene expression data. |
| GAAS |
Gene Array Analyzer Software |
| GLR |
a statistical analysis program to identify differentially expressed genes from microarray data |
| ANOVA 2.0 |
Statistical analysis is based on the single-factor ANalysis Of VAriance (ANOVA) |
| Rosetta |
toolkit for analyzing tabular data within the framework of rough set theory. |
| EXCEL template |
suite of Excel spreadsheet templates have been developed by Chih Long Liu that allows quick and useful processing of time course data for clustering analysis |
| tools for microarray |
tools for microarray |
| UCSF Spot |
a program for microarray image quantification |
| ArrayMiner 5.3 lite |
a set of analysis tools using advanced algorithms to reveal the true structure of your gene expression data |
| Venn Mapper 1.01 |
a program that compares heterologous microarray data sets, based on the number of common, differentially expressed genes. |
| MAIA 2.75 Demo |
Microarray Image Analysis Software , |
| MAGIC Tool 2.1 |
MicroArray Genome Imaging & Clustering Tool. |
| Array Tools 3.3 |
Add-In for Microsoft Excel, which is designed to handle the microarray data. |
| Genom 2005 |
application for analysing array-experiments. |
| Mayday 2.5 |
A workbench for visualization, analysis and storage of microarray data. |
| ChipInspector 2.0 |
software to analysis microarray data. |
| OligoWiz 2.1.3 |
Microarray Probe Designer. |
| ENIGMA 1.1 |
a software tool to extract gene expression modules from perturbational microarray data |
Miscellaneous |
|
| DynaFit 3.28.054 |
perform nonlinear least-squares regression of chemical kinetic, enzyme kinetic, or ligand-receptor binding data |
| Migrate 2.4.4 |
estimates effective population sizes and past migration rates |
|
arlequin 3.11 |
exploratory population genetics software |
| FBAT 2.0.2C |
FBAT --Family Based Association Testing software |
| GGT 2.0 |
for Graphical GenoTypes |
| CERVUS 3.0 |
program for assignment of parents to their offspring using genetic markers |
| SBW 2.7.7 |
The Systems Biology Workbench |
| Gepasi 3.30 |
software package for modeling biochemical systems |
| Map Manager QTX b20 |
QTX software for complex trait analysis |
| DBsolve 7.47 |
DBsolve - software for metabolic simulation after genome sequencing |
| boxit 2007 DEMO |
collect, store and organize information about all your antibodies |
| GRR 1.2.1.41 |
application for detecting pedigree errors via graphically inspecting the distribution for marker allele sharing among pairs of family members or all pairs of individuals in a study. |
| AceDB 4.9u |
a genome database designed specifically for handling bioinformatic data |
| MAPL98 / DIAL98 / GEST98 |
Statistical Genetics software |
| PED 5.1.2 |
interactive pedigree drawing software |
| PEDRAW 2.5 |
Pedigree Drawing Software |
| MassXpert 1.7.6 |
a mass spectrometric program for predicting and analysing mass spectrometric data obtained on proteins and peptides. |
| WinMDI ver 2.9 |
WinMDI (Windows Multiple Document Interafce for Flow Cytometry) |
| TestDNA |
a utility that generates FCS histograms of cell cycle data with known component values. |
| Cylchred 1.0.2 |
CELL CYCLE ANALYSIS |
| Flow Cytometer Simulator |
This application provides a simulation of a working flow cytometer |
| FCS File Mixer Sanitizer |
merge 2 or more FCS listmode files into a new file. |
| E-Cell 3.1.106 |
a concept of constructing virtual cells on computers |
| WEASEL 2.5 |
flow cytometry data analysis and display program |
| FCSM |
Frozen Cell Stock Monitor software |
| MICE 1.4 |
Mouse Information and Classification Entity software, |
| REtools 2.01 |
a program to assist in restriction enzyme use |
| PEDIGREE VIEWER 5.5 |
Draws and manipulates pedigree diagrams. |
| ezFreezer 1.4.4 Demo |
samples and specimens management software. |
| FCSExpress V3 Demo |
Flow Cytometry Data Analysis software. |
| Pegasys 0.6 |
workflow management for bioinformatics |
| BioDownloader |
a program for downloading and/or updating files from ftp/http servers |
| Pathway Studio 5.0 trial |
software to create and draw protein interaction networks and pathways. |
| Cytoscape 2.6.0 |
an open source bioinformatics software platform (Java)for visualizing molecular interaction networks. |
| Taverna 1.7 |
software tools to facilitate easy use of workflow and distributed compute technology. |
| APP 2.06 |
Advanced Pathway Painter. |
| EPE 1.3.0 |
Edinburgh Pathway Editor. |
| MetaPAT 07.02 |
A Tool for the Alignment of Metabolic Pathways |
| BiblioSpherePE |
Pathway/genomics analysis software. |
| CFC 1.0 |
A software package for pedigree analysis. |
| MultiQC 5.4.0.10 |
A Windows software application for quality control in clinical chemistry laboratories. |
| Progeny 7 trail |
LIMS, Genotyping, Pedigree Software. |
| InforBIO V5.26 |
e-Workbench for databasing, classification and identification of microbes. |
Chemical Draw |
|
| ACD/ChemSketch 11.0 |
advanced chemical drawing tool |
| Chemfont 97 |
a Windows font package that simplifies the entry of chemical equations and notation. |
| ISIS DRAW 2.5 |
chemically intelligent drawing package |
| Marvin 5.0.3 |
Java based chemical drawing tool |
| ACD/Structure Drawing Applet 1.30 |
a complete structure drawing, editing, and visualization tool |
| CarboDraw 1.0 |
designed to create carbohydrate structures |
| ChemFormatter 1.2.5 |
add-in program for Microsoft Office. ChemFormatter automatically applies font styles in a chemical document. |
| 1LanzCHE |
Chemistry True Type Font |
| Chemistry 4-D Draw Demo |
chemistry program combining the most advanced technologies in structure drawing. |
| JChemPaint 2.21 |
an editor for 2D molecular structures. |
| ChemDraw Ultra 11.0 Trial |
the software used by scientists to draw structures |
Interesting Stuff |
|
| Life32 2.16 |
a player for Conway's game of life |
| Primordial Life 3.21 |
Experience life and death in a window or as a screen saver! |
| breeder 3.0 |
an entertaining plant breeding game |
| Cafun 1.0 |
to create impressive simulations of complex systems |
| Molecular Expressions |
screen saver offers individuals a tremendous amount of variety |
|
Irving Geis SS |
a "screen saver" of images by Irving Geis |
| cyclovir.exe |
Screen saver demonstrating DNA chain termination caused by Acyclovir |
| ProteinMusic 1.1 |
converting DNA sequences into music. |
| MP 2.0 |
Molecular Probes Screensaver |
| Folding@home 5.03 |
a distributed computing project |
|
d2ol 3.0 |
d2ol 2.0 a distributed computing project from The Drug Design and Optimization Lab |
| 3D BioMolecula ScreenSaver 1.1 |
This 3D screensaver shows real 3D models of biological molecules in dynamics |
| 3D DNA Screesaver 1.0 |
a cool 3D screensaver that let's you look inside the cell. |
| Living Cell 3D Screensaver 1.3 |
Do you want to see what goes on inside living cells |
| 3D CHEMICAL ELEMENTS SCREENSAVER |
the smartest interactive Periodic Table and 3D Atom Modelling software |
| INSIDE THE CELL 3D |
Inside the Cell 3D screensaver will provide you with a unique opportunity to plunge into the very depths of the living organism |
| Pus-Poppin Frogs 1.0.1 |
a game about SNP and side effort |
| VEM |
Virtual Electron Microscope |
| microworld |
Microbiology Screensaver |
| Bio2MIDI v2.1 |
converts the text of a DNA or protein sequence to a MIDI file |
| flash games |
Genetics Activities flash games for Kids |
| Bugs 2.0 |
program that simulates bacteria-like organisms |
| Binary |
fills your screen with scrolling C/G/A/T |
| DNA Helix 1.0 |
screensaver that brings beautiful rotating DNA helices. |
| Gene Pool 6 beta |
artificial life simulation |
| Darwin Pond |
artificial life simulation |
| Dna-baser Screen Save |
Screen Saver. |
| brscreen |
BRAINY SCREEN SAVER |
| Biogenesis 0.5 |
the software simulates in a visual fashion the processes involved in the evolution of unicellular organisms at nature, |
| dna2abc 1.0.1 |
a Tcl/Tk application for turning DNA sequences into musical sequences |
